PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000443612
Common NameC2H2L21
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 256aa    MW: 28187.1 Da    PI: 7.3026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000443612genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002397119123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C++ F ++  L  H++ H
  MDP0000443612  97 FSCNYCKRKFYSSQALGGHQNAH 119
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-695125No hitNo description
PROSITE profilePS5015711.40697124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLTQNLNLEF ENDSEVTSQV TYSSIPLQEE SPDPSKDSTT TSSCLTNQKH QQQDPRPVSL  60
HLTLQFSSGD TELKGTGETS SEAAAPPTSE GTIPRVFSCN YCKRKFYSSQ ALGGHQNAHK  120
RERTMAKRAM RMGMFPDRYT SLASLPLHRS APSAFRSLGI QAHSAVHQNT MITSDHQRFL  180
VPDTRGVARF RQGYFGVPMF MDEDDVGMFW PGSFRQVGEX AGGHQLAQNP NMNTGTSMEP  240
RNSTSSSSPD LSLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.126410.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350832.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_008350833.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_008350834.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_008350835.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392636e-46ZFP4_ARATH; Zinc finger protein 4
TrEMBLD9ZIT10.0D9ZIT1_MALDO; C2H2L domain class transcription factor
STRINGPOPTR_0010s11330.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-44zinc finger protein 4